Damsel: analysis and visualisation of DamID sequencing in R
- Author(s)
- Page, CG; Lonsdale, A; Mitchell, KA; Schröder, J; Harvey, KF; Oshlack, A;
- Details
- Publication Year 2024-11-28,Volume 40,Issue #12,Page btae695
- Journal Title
- Bioinformatics
- Publication Type
- Research article
- Abstract
- SUMMARY: DamID sequencing is a technique to map the genome-wide interaction of a protein with DNA. Damsel is the first Bioconductor package to provide an end to end analysis for DamID sequencing data within R. Damsel performs quantification and testing of significant binding sites along with exploratory and visual analysis. Damsel produces results consistent with previous analysis approaches. AVAILABILITY AND IMPLEMENTATION: The R package Damsel is available for install through the Bioconductor project https://bioconductor.org/packages/release/bioc/html/Damsel.html and the code is available on GitHub https://github.com/Oshlack/Damsel/.
- Publisher
- Oxford University Press
- Keywords
- *Software; *Sequence Analysis, DNA/methods; Binding Sites; High-Throughput Nucleotide Sequencing/methods; DNA/genetics
- Department(s)
- Laboratory Research
- Publisher's Version
- https://doi.org/10.1093/bioinformatics/btae695
- Open Access at Publisher's Site
https://doi.org/10.1093/bioinformatics/btae695- Terms of Use/Rights Notice
- Refer to copyright notice on published article.
Creation Date: 2024-12-17 06:58:44
Last Modified: 2024-12-17 07:00:46